Alternatives to Apache Impala

To provide employees with the critical need of interactive querying, we’ve worked with Presto, an open-source distributed SQL query engine, over the years. Operating Presto at Pinterest’s scale has involved resolving quite a few challenges like, supporting deeply nested and huge thrift schemas, slow/ bad worker detection and remediation, auto-scaling cluster, graceful cluster shutdown and impersonation support for ldap authenticator.

Our infrastructure is built on top of Amazon EC2 and we leverage Amazon S3 for storing our data. This separates compute and storage layers, and allows multiple compute clusters to share the S3 data.

We have hundreds of petabytes of data and tens of thousands of Apache Hive tables. Our Presto clusters are comprised of a fleet of 450 r4.8xl EC2 instances. Presto clusters together have over 100 TBs of memory and 14K vcpu cores. Within Pinterest, we have close to more than 1,000 monthly active users (out of total 1,600+ Pinterest employees) using Presto, who run about 400K queries on these clusters per month.

Each query submitted to Presto cluster is logged to a Kafka topic via Singer. Singer is a logging agent built at Pinterest and we talked about it in a previous post. Each query is logged when it is submitted and when it finishes. When a Presto cluster crashes, we will have query submitted events without corresponding query finished events. These events enable us to capture the effect of cluster crashes over time.

Each Presto cluster at Pinterest has workers on a mix of dedicated AWS EC2 instances and Kubernetes pods. Kubernetes platform provides us with the capability to add and remove workers from a Presto cluster very quickly. The best-case latency on bringing up a new worker on Kubernetes is less than a minute. However, when the Kubernetes cluster itself is out of resources and needs to scale up, it can take up to ten minutes. Some other advantages of deploying on Kubernetes platform is that our Presto deployment becomes agnostic of cloud vendor, instance types, OS, etc.

#BigData #AWS #DataScience #DataEngineering

The algorithms and data infrastructure at Stitch Fix is housed in #AWS. Data acquisition is split between events flowing through Kafka, and periodic snapshots of PostgreSQL DBs. We store data in an Amazon S3 based data warehouse. Apache Spark on Yarn is our tool of choice for data movement and #ETL. Because our storage layer (s3) is decoupled from our processing layer, we are able to scale our compute environment very elastically. We have several semi-permanent, autoscaling Yarn clusters running to serve our data processing needs. While the bulk of our compute infrastructure is dedicated to algorithmic processing, we also implemented Presto for adhoc queries and dashboards.

Beyond data movement and ETL, most #ML centric jobs (e.g. model training and execution) run in a similarly elastic environment as containers running Python and R code on Amazon EC2 Container Service clusters. The execution of batch jobs on top of ECS is managed by Flotilla, a service we built in house and open sourced (see https://github.com/stitchfix/flotilla-os).

At Stitch Fix, algorithmic integrations are pervasive across the business. We have dozens of data products actively integrated systems. That requires serving layer that is robust, agile, flexible, and allows for self-service. Models produced on Flotilla are packaged for deployment in production using Khan, another framework we've developed internally. Khan provides our data scientists the ability to quickly productionize those models they've developed with open source frameworks in Python 3 (e.g. PyTorch, sklearn), by automatically packaging them as Docker containers and deploying to Amazon ECS. This provides our data scientist a one-click method of getting from their algorithms to production. We then integrate those deployments into a service mesh, which allows us to A/B test various implementations in our product.

For more info:

• Our Algorithms Tour: https://algorithms-tour.stitchfix.com/
• Our blog: https://multithreaded.stitchfix.com/blog/
• Careers: https://multithreaded.stitchfix.com/careers/

#DataScience #DataStack #Data

To provide employees with the critical need of interactive querying, we’ve worked with Presto, an open-source distributed SQL query engine, over the years. Operating Presto at Pinterest’s scale has involved resolving quite a few challenges like, supporting deeply nested and huge thrift schemas, slow/ bad worker detection and remediation, auto-scaling cluster, graceful cluster shutdown and impersonation support for ldap authenticator.

Our infrastructure is built on top of Amazon EC2 and we leverage Amazon S3 for storing our data. This separates compute and storage layers, and allows multiple compute clusters to share the S3 data.

We have hundreds of petabytes of data and tens of thousands of Apache Hive tables. Our Presto clusters are comprised of a fleet of 450 r4.8xl EC2 instances. Presto clusters together have over 100 TBs of memory and 14K vcpu cores. Within Pinterest, we have close to more than 1,000 monthly active users (out of total 1,600+ Pinterest employees) using Presto, who run about 400K queries on these clusters per month.

Each query submitted to Presto cluster is logged to a Kafka topic via Singer. Singer is a logging agent built at Pinterest and we talked about it in a previous post. Each query is logged when it is submitted and when it finishes. When a Presto cluster crashes, we will have query submitted events without corresponding query finished events. These events enable us to capture the effect of cluster crashes over time.

Each Presto cluster at Pinterest has workers on a mix of dedicated AWS EC2 instances and Kubernetes pods. Kubernetes platform provides us with the capability to add and remove workers from a Presto cluster very quickly. The best-case latency on bringing up a new worker on Kubernetes is less than a minute. However, when the Kubernetes cluster itself is out of resources and needs to scale up, it can take up to ten minutes. Some other advantages of deploying on Kubernetes platform is that our Presto deployment becomes agnostic of cloud vendor, instance types, OS, etc.

#BigData #AWS #DataScience #DataEngineering

From my point of view, both OpenRefine and Apache Hive serve completely different purposes. OpenRefine is intended for interactive cleaning of messy data locally. You could work with their libraries to use some of OpenRefine features as part of your data pipeline (there are pointers in FAQ), but OpenRefine in general is intended for a single-user local operation.

I can't recommend a particular alternative without better understanding of your use case. But if you are looking for an interactive tool to work with big data at scale, take a look at notebook environments like Jupyter, Databricks, or Deepnote. If you are building a data processing pipeline, consider also Apache Spark.

Edit: Fixed references from Hadoop to Hive, which is actually closer to Spark.

The algorithms and data infrastructure at Stitch Fix is housed in #AWS. Data acquisition is split between events flowing through Kafka, and periodic snapshots of PostgreSQL DBs. We store data in an Amazon S3 based data warehouse. Apache Spark on Yarn is our tool of choice for data movement and #ETL. Because our storage layer (s3) is decoupled from our processing layer, we are able to scale our compute environment very elastically. We have several semi-permanent, autoscaling Yarn clusters running to serve our data processing needs. While the bulk of our compute infrastructure is dedicated to algorithmic processing, we also implemented Presto for adhoc queries and dashboards.

Beyond data movement and ETL, most #ML centric jobs (e.g. model training and execution) run in a similarly elastic environment as containers running Python and R code on Amazon EC2 Container Service clusters. The execution of batch jobs on top of ECS is managed by Flotilla, a service we built in house and open sourced (see https://github.com/stitchfix/flotilla-os).

At Stitch Fix, algorithmic integrations are pervasive across the business. We have dozens of data products actively integrated systems. That requires serving layer that is robust, agile, flexible, and allows for self-service. Models produced on Flotilla are packaged for deployment in production using Khan, another framework we've developed internally. Khan provides our data scientists the ability to quickly productionize those models they've developed with open source frameworks in Python 3 (e.g. PyTorch, sklearn), by automatically packaging them as Docker containers and deploying to Amazon ECS. This provides our data scientist a one-click method of getting from their algorithms to production. We then integrate those deployments into a service mesh, which allows us to A/B test various implementations in our product.

For more info:

• Our Algorithms Tour: https://algorithms-tour.stitchfix.com/
• Our blog: https://multithreaded.stitchfix.com/blog/
• Careers: https://multithreaded.stitchfix.com/careers/

#DataScience #DataStack #Data

As a frontend engineer on the Algorithms & Analytics team at Stitch Fix, I work with data scientists to develop applications and visualizations to help our internal business partners make data-driven decisions. I envisioned a platform that would assist data scientists in the data exploration process, allowing them to visually explore and rapidly iterate through their assumptions, then share their insights with others. This would align with our team's philosophy of having engineers "deploy platforms, services, abstractions, and frameworks that allow the data scientists to conceive of, develop, and deploy their ideas with autonomy", and solve the pain of data exploration.

The final product, code-named Dora, is built with React, Redux.js and Victory, backed by Elasticsearch to enable fast and iterative data exploration, and uses Apache Spark to move data from our Amazon S3 data warehouse into the Elasticsearch cluster.

I am researching different querying solutions to handle ~1 trillion records of data (in the realm of a petabyte). The data is mostly textual. I have identified a few options: Milvus, HBase, RocksDB, and Elasticsearch. I was wondering if there is a good way to compare the performance of these options (or if anyone has already done something like this). I want to be able to compare the speed of ingesting and querying textual data from these tools. Does anyone have information on this or know where I can find some? Thanks in advance!

Hi, I'm building a machine learning pipelines to store image bytes and image vectors in the backend.

So, when users query for the random access image data (key), we return the image bytes and perform machine learning model operations on it.

I'm currently considering going with Amazon S3 (in the future, maybe add Redis caching layer) as the backend system to store the information (s3 buckets with sharded prefixes).

As the latency of S3 is 100-200ms (get/put) and it has a high throughput of 3500 puts/sec and 5500 gets/sec for a given bucker/prefix. In the future I need to reduce the latency, I can add Redis cache.

Also, s3 costs are way fewer than HBase (on Amazon EC2 instances with 3x replication factor)

I have not personally used HBase before, so can someone help me if I'm making the right choice here? I'm not aware of Hbase latencies and I have learned that the MOB feature on Hbase has to be turned on if we have store image bytes on of the column families as the avg image bytes are 240Kb.

When I joined NYT there was already broad dissatisfaction with the LAMP (Linux Apache HTTP Server MySQL PHP) Stack and the front end framework, in particular. So, I wasn't passing judgment on it. I mean, LAMP's fine, you can do good work in LAMP. It's a little dated at this point, but it's not ... I didn't want to rip it out for its own sake, but everyone else was like, "We don't like this, it's really inflexible." And I remember from being outside the company when that was called MIT FIVE when it had launched. And been observing it from the outside, and I was like, you guys took so long to do that and you did it so carefully, and yet you're not happy with your decisions. Why is that? That was more the impetus. If we're going to do this again, how are we going to do it in a way that we're gonna get a better result?

So we're moving quickly away from LAMP, I would say. So, right now, the new front end is React based and using Apollo. And we've been in a long, protracted, gradual rollout of the core experiences.

React is now talking to GraphQL as a primary API. There's a Node.js back end, to the front end, which is mainly for server-side rendering, as well.

Behind there, the main repository for the GraphQL server is a big table repository, that we call Bodega because it's a convenience store. And that reads off of a Kafka pipeline.

We've been using PostgreSQL since the very early days of Zulip, but we actually didn't use it from the beginning. Zulip started out as a MySQL project back in 2012, because we'd heard it was a good choice for a startup with a wide community. However, we found that even though we were using the Django ORM for most of our database access, we spent a lot of time fighting with MySQL. Issues ranged from bad collation defaults, to bad query plans which required a lot of manual query tweaks.

We ended up getting so frustrated that we tried out PostgresQL, and the results were fantastic. We didn't have to do any real customization (just some tuning settings for how big a server we had), and all of our most important queries were faster out of the box. As a result, we were able to delete a bunch of custom queries escaping the ORM that we'd written to make the MySQL query planner happy (because postgres just did the right thing automatically).

And then after that, we've just gotten a ton of value out of postgres. We use its excellent built-in full-text search, which has helped us avoid needing to bring in a tool like Elasticsearch, and we've really enjoyed features like its partial indexes, which saved us a lot of work adding unnecessary extra tables to get good performance for things like our "unread messages" and "starred messages" indexes.

I can't recommend it highly enough.

Our whole DevOps stack consists of the following tools:

• GitHub (incl. GitHub Pages/Markdown for Documentation, GettingStarted and HowTo's) for collaborative review and code management tool
• Respectively Git as revision control system
• SourceTree as Git GUI
• Visual Studio Code as IDE
• CircleCI for continuous integration (automatize development process)
• Prettier / TSLint / ESLint as code linter
• SonarQube as quality gate
• Docker as container management (incl. Docker Compose for multi-container application management)
• VirtualBox for operating system simulation tests
• Kubernetes as cluster management for docker containers
• Heroku for deploying in test environments
• nginx as web server (preferably used as facade server in production environment)
• SSLMate (using OpenSSL) for certificate management
• Amazon EC2 (incl. Amazon S3) for deploying in stage (production-like) and production environments
• PostgreSQL as preferred database system
• Redis as preferred in-memory database/store (great for caching)

The main reason we have chosen Kubernetes over Docker Swarm is related to the following artifacts:

• Key features: Easy and flexible installation, Clear dashboard, Great scaling operations, Monitoring is an integral part, Great load balancing concepts, Monitors the condition and ensures compensation in the event of failure.
• Applications: An application can be deployed using a combination of pods, deployments, and services (or micro-services).
• Functionality: Kubernetes as a complex installation and setup process, but it not as limited as Docker Swarm.
• Monitoring: It supports multiple versions of logging and monitoring when the services are deployed within the cluster (Elasticsearch/Kibana (ELK), Heapster/Grafana, Sysdig cloud integration).
• Scalability: All-in-one framework for distributed systems.
• Other Benefits: Kubernetes is backed by the Cloud Native Computing Foundation (CNCF), huge community among container orchestration tools, it is an open source and modular tool that works with any OS.

Recently we were looking at a few robust and cost-effective ways of replicating the data that resides in our production MongoDB to a PostgreSQL database for data warehousing and business intelligence.

We set ourselves the following criteria for the optimal tool that would do this job: - The data replication must be near real-time, yet it should NOT impact the production database - The data replication must be horizontally scalable (based on the load), asynchronous & crash-resilient

Based on the above criteria, we selected the following tools to perform the end to end data replication:

We chose MongoDB Stitch for picking up the changes in the source database. It is the serverless platform from MongoDB. One of the services offered by MongoDB Stitch is Stitch Triggers. Using stitch triggers, you can execute a serverless function (in Node.js) in real time in response to changes in the database. When there are a lot of database changes, Stitch automatically "feeds forward" these changes through an asynchronous queue.

We chose Amazon SQS as the pipe / message backbone for communicating the changes from MongoDB to our own replication service. Interestingly enough, MongoDB stitch offers integration with AWS services.

In the Node.js function, we wrote minimal functionality to communicate the database changes (insert / update / delete / replace) to Amazon SQS.

Next we wrote a minimal micro-service in Python to listen to the message events on SQS, pickup the data payload & mirror the DB changes on to the target Data warehouse. We implemented source data to target data translation by modelling target table structures through SQLAlchemy . We deployed this micro-service as AWS Lambda with Zappa. With Zappa, deploying your services as event-driven & horizontally scalable Lambda service is dumb-easy.

In the end, we got to implement a highly scalable near realtime Change Data Replication service that "works" and deployed to production in a matter of few days!

Recently we were looking at a few robust and cost-effective ways of replicating the data that resides in our production MongoDB to a PostgreSQL database for data warehousing and business intelligence.

We set ourselves the following criteria for the optimal tool that would do this job: - The data replication must be near real-time, yet it should NOT impact the production database - The data replication must be horizontally scalable (based on the load), asynchronous & crash-resilient

Based on the above criteria, we selected the following tools to perform the end to end data replication:

We chose MongoDB Stitch for picking up the changes in the source database. It is the serverless platform from MongoDB. One of the services offered by MongoDB Stitch is Stitch Triggers. Using stitch triggers, you can execute a serverless function (in Node.js) in real time in response to changes in the database. When there are a lot of database changes, Stitch automatically "feeds forward" these changes through an asynchronous queue.

We chose Amazon SQS as the pipe / message backbone for communicating the changes from MongoDB to our own replication service. Interestingly enough, MongoDB stitch offers integration with AWS services.

In the Node.js function, we wrote minimal functionality to communicate the database changes (insert / update / delete / replace) to Amazon SQS.

Next we wrote a minimal micro-service in Python to listen to the message events on SQS, pickup the data payload & mirror the DB changes on to the target Data warehouse. We implemented source data to target data translation by modelling target table structures through SQLAlchemy . We deployed this micro-service as AWS Lambda with Zappa. With Zappa, deploying your services as event-driven & horizontally scalable Lambda service is dumb-easy.

In the end, we got to implement a highly scalable near realtime Change Data Replication service that "works" and deployed to production in a matter of few days!

We use MongoDB as our primary #datastore. Mongo's approach to replica sets enables some fantastic patterns for operations like maintenance, backups, and #ETL.

As we pull #microservices from our #monolith, we are taking the opportunity to build them with their own datastores using PostgreSQL. We also use Redis to cache data we’d never store permanently, and to rate-limit our requests to partners’ APIs (like GitHub).

When we’re dealing with large blobs of immutable data (logs, artifacts, and test results), we store them in Amazon S3. We handle any side-effects of S3’s eventual consistency model within our own code. This ensures that we deal with user requests correctly while writes are in process.